Friday, July 5, 2019

From Bench to Bedside: Translational Research and Genetic Counseling


Last year, when I ranked genetic counseling programs, I considered each program carefully. I thought about what department the program was part of, the logistics of coursework and clinical rotations, distance from home and of course, finances. The opportunity to pursue a work-study position while attending Pitt’s genetic counseling program was one of many features that drew me to the program. Having worked in an academic lab for the last few years, I was concerned I was “behind” on hands-on clinical experience, so I spent my first few months in Pittsburgh adjusting to being back in school and looking for genetic counseling assistant jobs. I also decided to reach out to Dr. Kelly Bailey, a physician and researcher at the Children’s Hospital of Pittsburgh (CHP). We were introduced by a mutual colleague who knew we shared an interest in sarcoma and I was hoping she could help me navigate the sarcoma/cancer clinic setting in Pittsburgh.
Dr. Bailey’s research focuses on Ewing sarcoma, a rare childhood bone and soft tissue cancer. She is also interested in using patient-derived primary tumor cells as a tool to investigate novel therapeutics and tumor biology. 
Children's Hospital of Pittsburgh
When I met with her initially, Dr. Bailey put me in contact with the physician and genetic counselor who run the Pediatric Cancer Predisposition Program at CHP. I asked if they were looking for a student to help with any aspect of the clinic but alas, I was out of luck. I did, however, begin working with them on a thesis project. While I had set out to find a job, a thesis was the next best thing and I mentally checked it off my list.    
Time passed, classes and assignments demanded my attention and I stopped looking for work. Then one day I found myself back in Dr. Bailey’s office. She had a new clinical project in development that was also interesting from a genetic counselling perspective. She offered me a position in her laboratory as a research assistant and I accepted.
As a research assistant, I work on multiple projects in the lab using molecular biology techniques that are also used in clinical genetics laboratories. Currently, I’m working on a project that involves RNAseq of patient tumor samples to determine the expression patterns before and after treatment with a novel drug. The goal of a project like this is to discover the mechanisms by which drug treatments or specific genetic mutations lead to tumor cell death. If we can elucidate these mechanisms, we can design novel cancer treatments.
With the exception of sarcomas diagnosed in patients with Li-Fraumeni syndrome, sarcomas are not typically considered hereditary tumors. However, as the field of genetics expands, and more paired patient tumor and germline DNA are sequenced, we are learning more about what genetic changes drive these rare tumors. Recently, we reported a patient with Ewing sarcoma who has a germline mutation in a gene called BARD1 – one of BRCA1’s binding partners (Venier, R.E. et al., 2019. Pediatr Blood Cancer PMID: 31157509). Further, during the genetic counseling session, we discovered a paternal history of early onset breast cancers. While this is just the tip of the iceberg, there is evidence from other groups that suggest Ewing sarcoma may have a higher hereditary component than originally thought. Being a part of this project has been exciting; it shows the importance of collaboration between multiple disciplines including oncology, genetics, pathology, and research. Case studies can provide a “jumping off point” for additional projects in the lab and in the clinic that aim to further understand the potential hereditary component of Ewing sarcoma and other cancers. 
My laboratory experience has provided me with a unique perspective. I have a detailed understanding of the molecular genetic techniques used to facilitate clinical tests because I’ve designed and completed the experiments myself. It’s also valuable to have something familiar to do at work (extract RNA, take care of cells, run westerns), especially during the first few months when I was still adapting to a new city and being back in school. Now that I’ve begun my clinical rotations, I’ve discovered that I’ll have no problem getting that hands-on clinical experience that concerned me. This work position is providing a fantastic opportunity for me to bridge the gap between the bench and bedside. In my experience, not only does translational research bring cutting edge science to the clinic, but it motivates multidisciplinary teams to strive to find the best treatments for their patients. Working with an incredible physician/scientist like Dr. Bailey as well as her colleagues at CHP has been a great experience and I’m excited for the next year of research!


Rose Venier, Class of 2020

Friday, June 21, 2019

Student Work Position: Genetic Counseling Assistant at UPMC Hereditary GI Tumor Program



One of the things that drew me to Pitt’s Genetic Counseling Program was the fact that there are opportunities for students to have part time jobs.  Additionally, many students do their thesis projects through their work positions.  This attracted me to Pitt’s Genetic Counseling Program because I knew I wanted to continue to work while I got my degree.  The ability to do my thesis through my work position allowed me to start thinking about projects earlier and gave me the connections I needed to set up my project.
For my student work position, I work at UPMC Shadyside in the Hereditary Gastrointestinal (GI) Tumor Program as a genetic counseling assistant.  This group counsels patients who are referred for hereditary GI cancer risk assessment and manages care for individuals who have a hereditary predisposition to GI cancers, including Lynch Syndrome, Familial Adenomatous Polyposis (FAP), Hereditary Diffuse Gastric Cancer (HDGC), Familial Pancreatic Cancer (FPC) and more.  The team consists of a gastroenterologist who specializes in hereditary gastrointestinal predispositions, two genetic counselors, and several research coordinators who enroll and coordinate patient participation in a variety of research studies.
The clinic sees 10 new patients a week, and my job is to prepare for each appointment to assist the genetic counselors.  About a week in advance, I extract relevant information from patient medical records to complete intake forms.  I call patients on the phone to review their personal history and see if any records need to be requested from other institutions before their appointments.  While I have them on the phone, I also draw a pedigree so the counselors have more information about potential differential diagnoses before the session.  After the appointment, I make the pedigrees in progeny, a secure pedigree database, so a clean copy can be uploaded to the electronic medical record system.  Because of my past experiences as a research coordinator, I also occasionally consent patients to research studies and carry out study procedures. 

Working as a GCA has been such a rewarding experience for me.  During the first year of the program when I was focusing on classes, being able to speak with patients and learn more about cancer genetics (which I have always been interested in) was perfect for me.  In the particularly stressful academic weeks, it reminded me why I became interested in genetic counseling in the first place.  In addition, I was able to have months of practice preparing for cases before entering my clinical rotations, which allowed me to be more confident heading into my first rotation. 
I truly enjoy the time I am able to spend in the office.  It has allowed me to take a step back from the hectic class schedule while still being able to learn about topics relevant to my future career.  I have made connections with people in the field who have become my mentors.  My job allows me to continue to learn more about something I am passionate about, and I am very grateful for the experience.  Now that clinical rotations have begun, this work position will be perhaps the only constant in my life as I change rotation sites regularly.  I am excited to continue working and growing in the UPMC Hereditary GI Tumor Program for the next year.
Christine Drogan, class of 2020